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Liver cells in this mouse contain the fluorescent protein iRFP. The mouse was exposed to near-infrared light, which has caused iRFP to emit light waves that are also near-infrared. The composite image shows these fluorescent near-infrared waves passing re

Image: Albert Einstein College of Medicine

 
Issue no. 26, 2011
Published: Jul 22, 2011

New fluorescent protein makes internal organs visible
Toilet research funded by Bill Gates foundation
Light propagates as if 'space is missing'
Artificial leaves make fuel from sunlight
Pure nanotubes by the kilo
European team creates robotic octopus
Computers understand hand-waving descriptions
Anticensorship software to help rebels get the word out
It's tough at the top for alpha males

New fluorescent protein makes internal organs visible
Researchers at Albert Einstein College of Medicine of Yeshiva University have developed the first fluorescent protein that enables scientists to clearly 'see' the internal organs of living animals without the need for a scalpel or imaging techniques that can have side effects or increase radiation exposure.

The new probe could prove to be a breakthrough in whole-body imaging - allowing for example doctors to monitor the growth of tumours in order to assess the effectiveness of anti-cancer therapies. In contrast to other body-scanning techniques, fluorescent-protein imaging does not involve radiation exposure or require the use of contrast agents.

For the past 20 years scientists have used a variety of coloured fluorescent proteins, derived from jellyfish and corals, to visualize cells and their organelles and molecules. But using fluorescent probes to peer inside live mammals has posed a major challenge. This is because haemoglobin effectively absorbs the blue, green, red and other wavelengths used to stimulate standard fluorescent proteins along with any wavelengths emitted by the proteins when they do light up.

The Yeshiva researchers engineered a fluorescent protein from a bacterial phytochrome. This new protein, dubbed iRFP, both absorbs and emits light in the near-infrared portion of the electromagnetic spectrum. The researchers targeted their fluorescent protein to the liver - an organ particularly difficult to visualize. Adenovirus particles containing the gene for iRFP were injected into mice. Once the viruses and their gene cargoes infected liver cells, the infected cells expressed the gene and produced iRFP protein. The mice were then exposed to near-infrared light and it was possible to visualize the resulting emitted fluorescent light using a whole-body imaging device.
MedicalXpress / Nature Biotechnology    Jul 18, 2011 back to top

Toilet research funded by Bill Gates foundation
Cheap, waterless toilets that can turn human waste into clean water and fertilizer within 24 hours are being designed and built by eight engineering teams around the world.

The goal of the Bill & Melinda Gates Foundation's USD 3m Reinventing the Toilet Challenge is to bring affordable, sustainable human waste treatment to the 2.6bn people in the developing world - about 40% of the world's population - who have no access to flush toilets. That, in turn, is expected to reduce the number of children who die each year of diarrheal diseases - a figure reported to be around 1.5m.

The Reinventing the Toilet Challenge was announced by the Gates Foundation Tuesday in Kigali, Kenya, at the 2011 AfricaSan Conference, which focuses on sanitation and hygiene. It was among USD 42m in new grants from the foundation targeting sanitation and clean water.

The toilet cannot be hooked up to water, sewage or power lines and must cost less than five cents per user per day. It must convert urine and faeces into clean water, mineral ash fertilizer, CO2 and energy. The ability to treat waste within 24 hours is important because most existing 'green' toilets rely on composting, which takes a long time. Besides the waste processing itself, the teams also need to makes sure the toilet is safe and robust. Developers also face cultural challenges.
CBC News    Jul 20, 2011 back to top

Light propagates as if 'space is missing'
Researchers in the UK and the US have crafted an optical nanostructure that allows light to pass through without accumulating a phase change - as if the medium were completely missing in space. The device could find applications in optoelectronics, they say, for instance as a way of transporting signals without allowing information to become distorted.

Whenever light travels through a medium it experiences a phase-shift, as individual oscillations become out of phase with each other. In certain optics applications, including interferometers, these phase variations can introduce an unwanted dispersion of frequencies. This effect can lead to phase distortions, which ultimately reduce the quality of signals. But now the team has found a way around this issue. They have designed a way to control the dispersion of light by manufacturing a metamaterial that has with a refractive index of zero.

The device includes photonic crystals, which are materials with a periodic variation of the dielectric constant, resulting in a photonic band gap. The team fabricated photonic crystals with the unusual property of having a negative refractive index. One outcome of this optical property - not found anywhere in nature - is that the phase of light travelling through the photonic crystal flows in the opposite direction to the flow of energy.

The device consists of alternating layers, roughly 2 µm thick, of these photonic crystals along with positive index materials. The result is that the phase of light keeps oscillating but when it emerges from the device is has undergone zero overall phase change.
PhysicsWorld / Nature Photonics    Jul 18, 2011 back to top

Artificial leaves make fuel from sunlight
Two teams of researchers in the US have taken important steps towards the creation of commercially viable 'artificial leaf' - a hypothetical device that can turn sunlight into electrical energy or fuel by mimicking some aspects of photosynthesis.

Both teams made their devices from silicon wafers that are coated with catalytic metals and protective layers. The solar cells are about the size of a credit card and can capture sunlight and then use the energy to split water into its constituent oxygen and hydrogen. This is different to conventional cells, which convert light directly into electricity. With these new devices, the ultimate plan is to recombine the two gases in an integrated fuel cell, thus converting the chemical energy to electrical energy. Producing fuel rather than electricity has the advantage that the fuel can be easily stored until it is needed.

Both artificial leaves use a silicon n-p junction: a bilayer of n-type and p-type silicon. An incident photon is absorbed to create an electron-hole pair in the semiconductor. The electrons migrate to the n-side and the holes to the p-side. The holes then drive the splitting of water in a process mediated by the outermost layer of the cell, which is a photocatalyst. Unlike some of the exotic photocatalysts used in earlier devices, the catalyst in these new devices are made of cobalt phosphate, which is an abundant and cheap material.

The main challenge was how to prevent the silicon from reacting with the water. The two teams took different approaches to the problem. One group used the catalyst itself as a protective layer, binding a thin film of pure cobalt firmly to the silicon before converting it to the phosphate form. The other team used a thin film of conductive indium tin oxide in front of the p-type silicon as the protective layer.
PhysicsWorld    Jul 20, 2011 back to top

Pure nanotubes by the kilo
An improved process for making large amounts of pure metallic carbon nanotubes could hold the key to overhauling the electrical power grid with more efficient transmission lines. Researchers at Rice University in Houston plan to generate a large quantity of this material by the end of summer. They'll use these nanotubes to make long and highly conductive fibres that could be woven into more efficient electrical transmission lines.

There are a few different classes of carbon nanotube, each with slightly different properties and different potential uses. Unfortunately, existing production methods result in a mixture of different nanotubes, with varying dimensions and different electrical properties. Purely semiconducting nanotubes, useful for future integrated circuits, are in the mix with metallic nanotubes that could be used to make highly conductive wires. So nanotubes have to be separated by type, a slow and expensive process.

The Rice team has now improved on a method for making pure nanotubes that they first developed in 2006. Called 'amplification', it should eventually allow them to turn a nanogram of pure carbon nanotubes into a gram, then a kilogram, then a ton. They start by separating a small amount of pure metallic nanotubes from a mixture, and then attach a catalyst to the tip of each tube. They then put the nanotubes into a pressurized, temperature-controlled chamber and feed in a mixture of gases. The nanotubes double in size, growing from the catalyst at the tip. The existing nanotube acts as a template that dictates the diameter, structure, and properties of the extra length of the nanotube. The nanotubes are then cut and the process is repeated.
Technology Review    Jul 21, 2011 back to top

European team creates robotic octopus
One day a giant robotic octopus might save your life. That is one of the applications a team of European scientists thinks its robotic octopus could have beyond navigating underwater and grasping objects. Recently they took the first step by creating a robotic octopus arm. The arm is part of a larger interdisciplinary European project funded by the European Commission to create a functional full-body octopus robot.

Creating functional soft robots is an enormous challenge because most engineering is based on rigid materials, while the technologies for building compliant structures are not as well developed. Other bio-inspired soft robots have locomotion, but they cannot grasp and manipulate objects like an octopus. An octopus has a musculature that is unusual in nature and typically found only in tongues and elephant trunks. The European team studied the octopus' movement and found that in order to push, the arms shorten and elongate.

Their robotic prototype is about 45cm long and modelled after a real octopus that inhabits the Mediterranean. The waterproof arm is made from silicone and embedded with a steel cable anchored to a set of nylon cables. By manipulating the cable, the arm can grasp objects. There is enough friction from the silicone exterior that sucker-like components were not needed.

Although the Octopus Project didn't start with specific application goals, such a robot could have a number of uses. A team of British surgeons is interested in applying the technology to an endoscope that turns from a soft tool into a hard one that can perform surgery.
MSNBC / Bioinspiration & Biomimetics    Jul 19, 2011 back to top

Computers understand hand-waving descriptions
Describing objects is so much easier when you use your hands, the classic being 'the fish was this big'. For humans, it's easy to understand what is meant, but computers struggle, and existing gesture-based interfaces only use set movements that translate into particular instructions. Now a system called Data Miming can recognise objects from gestures without the user having to memorise a 'vocabulary' of specific movements.

Data Miming uses a Microsoft Kinect motion-capture camera to create a 3D representation of a user's hand movements. Voxels, or pixels in three dimensions, are activated when users pass their hands through the space represented by each voxel. And when a user encircles their fingers to indicate a table leg, say, the system can also identify that all of the enclosed space should be included in the representation. It then compares user-generated representations with a database of objects in voxel form and selects the closest match.

In tests the system correctly recognised three-quarters of descriptions, and the intended item was in the top three matches from its database 98% of the time. The system could be incorporated into online shopping so users could gesture to describe the type of product they want and have the system make a suggestion.
New Scientist    Jul 20, 2011 back to top

Anticensorship software to help rebels get the word out
State-backed internet censorship is the method of choice for countries that want to crack down on citizens spreading messages of revolution online. But now dissidents have a tool to help them fight back. Telex, developed by computer scientists at the University of Michigan, US and the University of Waterloo, Canada, transmits information to blocked websites by piggybacking on uncensored connections with the aid of friendly foreign internet service providers (ISPs).

Users install the Telex client and then make a secure connection to an uncensored site outside of the censor's network. The connection looks normal, but Telex tags the traffic with a secret key. Foreign ISPs in the network between the client and destination site can look for these tags and redirect the connection to an anonymising service such as a proxy server. Using Telex is more robust than using such servers directly, as censors can block access to a proxy once it is discovered.

The researchers have tested the system by watching YouTube videos in Beijing, China, despite the site being blocked in that country, but they say it's not yet ready for real users. One barrier might be the need for foreign ISPs to install Telex software. 'Widespread ISP deployment might require incentives from governments,' suggest the researchers - something that the US government might be interested in given its plans to provide rebels with an 'internet in a suitcase'. Telex also wouldn't be able to help during an Egypt-style disconnect, as dissidents must at least be able to connect to uncensored sites.
New Scientist    Jul 19, 2011 back to top

It's tough at the top for alpha males
If you are feeling envious of your boss's paycheck, a new study confirms that success comes with high stress, possibly as much as faced by those who have to struggle to find a bite to eat. The results of nine years of research on wild baboons suggest that despite perks like easy access to mates and food, top-ranking males experience similar stress levels as their lowest-rung counterparts.

Those in the middle showed lower stress than either the top or bottom ranking males, according to measurements of testosterone and a stress hormone known as glucocorticoid. Samples were taken from the faeces of a wild male baboon population in Ambelosi, Kenya. While the stress levels at the top and bottom were similar, they were likely caused by different problems.

Alpha baboons spent lots of energy fighting to stay on top and trying to mate with as many females as possible, while the low-ranking males expended lots of effort searching for food. Meanwhile, there may be perks for not reaching quite so high. The second-rate beta males received about the same amount of attention, in the form of grooming, from females, but did 'slightly better than predicted' at reaching their 'full reproductive potential', the study's authors write.
ABC New / Science    Jul 15, 2011 back to top
 
         
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